Software
mOTUs
Microbial abundance, activity and population genomic profiling with mOTUs
SIAMCAT
Statistical Inference of Associations between Microbial Communities And host phenoTypes
GECCO
Gene Cluster prediction with Conditional Random Fields
Pyrodigal
Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes.
PyHMMER
Cython bindings and Python interface to HMMER3.
Cayman
Profiling carbohydrate-active enzymes in metagenomes
IGUA
Fast, flexible gene cluster family delineation with IGUA.
PyOrthoANI, PyFastANI, PySkANI
Python interface to OrthoANI, FastANI, and skani; methods for computing average nucleotide identity.